An image processing apparatus includes a divider that generates a plurality pieces of third image information on the basis of a plurality of pieces of first image information and a plurality of pieces of second image information, a determiner that determines, on the basis of information regarding a sample, a filter to be used for the plurality of pieces of third image information, and a processor that deconvolutes each of the plurality of pieces of third image information using the determined filter. An image sensor that has received first resulting light emitted from a sample that has received first light emitted from a first angle outputs the plurality of pieces of first image information. The image sensor that has received second resulting light emitted from the sample that has received second light emitted from a second angle outputs the plurality of pieces of second image information.