The present invention relates to a method of controlling a pulsed radar level gauge system, comprising the steps of: acquiring a signal indicative of a present operating temperature; determining an initial frequency control parameter for control of at least one of transmission signal generating circuitry and reference signal generating circuitry based on the present operating temperature and a plurality of data sets each comprising data indicative of a previous operating temperature and a previously determined frequency control parameter for the previous operating temperature; and controlling, starting from the initial frequency control parameter, at least one of the transmission signal generating circuitry and the reference signal generating circuitry to achieve the known frequency difference between the first pulse repetition frequency and the second pulse repetition frequency at the present operating temperature.