An emulation environment includes a host system and an emulator. The host system configures the emulator to load a design under test (DUT) and the emulator emulates the DUT. The emulator includes one or more design field-programmable gate arrays (FPGAs) that emulate the DUT. In addition, the emulator includes at least one system FPGA with a logic analyzer and multiple virtual FPGA. The virtual FPGAs emulate sections of the DUT. By the virtual FPGAs emulating sections of the DUT, the logic analyzer is able to obtain for performing logic analysis certain signals from the virtual FPGAs, rather than from the design FPGAs.