The present invention is related to an apparatus for activating electrophysiological mechanism and the method for configuring the same, which are based on diagnostic codes comprising at least more than two codes selected from a group of code classified by hue contrast to temperature differences according to heat distribution of a body. As a prescription for the above diagnostic codes, the activation prescription codes comprising code streams are generated, and then signals corresponding to each code are sequentially extracted and outputted as stimuli, and then finally become to provide activation stimuli to a body. The apparatus according to the present invention measures the distribution of body temperature, sets potential difference within an isolated system according to the distribution, and thus forces vibrations or waves with accelerated motion to be delivered to a whole body. Therefore, the present invention provides effects for being observed for electrophysiological mechanism, in which stimuli for physical treatment are delivered to a whole body as well as a special part of a body.