A videoconferencing system for determining alignment information for images captured by two or more cameras is disclosed. The videoconferencing system can include a plurality of endpoints and at least one control unit (CU) such as a multipoint control unit (MCU), for example. An endpoint can include a plurality of cameras and at least one projector. The projector is used to project a pattern at the near end site, which pattern is captured by the plurality of cameras. The image frames produced by the cameras are processed to determine the identity and location coordinates of the images of the projected patterns. The location coordinates can be used as reference points to be used by applications such as telepresence, 3D videoconferencing, and morphing.