A method for coregistration of multi-modal images obtained in different geometries includes acquiring multi-modal image data, wherein the multi-model image data includes image data of a first modality and image data of a second modality, wherein the image data of the respective modalities have different geometries, defining a volume of interest in the multi-modal image data, segmenting the image data of the first modality and incorporating segmentation data of the first modality into a reconstruction of the second modality, and applying a registration of the second modality image data to the first modality image data according to a similarity measure through the volume of interest, wherein an output of the registration comprises superimposed multi-modal image data.