One embodiment of the invention is directed to a light mixing illuminator for illuminating an object, comprising an array of light emitting elements wherein at least some of the elements emit light of different wavelengths. An optical device is employed that focuses the light from the elements to a Fourier plane of the device, wherein the light emitting elements are arranged so that at least the zero spatial frequency components of light of the different wavelengths from the elements substantially overlap in a region at the Fourier plane. An objective is used to project the region onto the object. A mask is used that selectively blocks some of spatial frequency components of light from the elements without blocking the zero spatial frequency components of light from reaching the object.