A calibration system may be provided for calibrating wireless communications circuitry in an electronic device during manufacturing. The calibration system may include data acquisition equipment for receiving an amplitude-modulated calibration signal from the electronic device. The calibration system may include calibration computing equipment for extracting pre-distortion coefficients from the amplitude-modulated calibration signal. The calibration computing equipment may be configured to detect a bulk phase drift in the amplitude-modulated calibration signal. The calibration computing equipment may be configured to remove the bulk phase drift from the amplitude-modulated calibration signal. The wireless communications circuitry may include a power amplifier that distorts a signal generated by the wireless communications circuitry. The wireless communications circuitry may include a pre-distortion compensator for countering the distortion. The pre-distortion coefficients determined from the phase drift corrected amplitude-modulated calibration signal may be used by the pre-distortion compensator when countering the distortion.