A system for configuring base station parameters comprises a base station, a mobile station and a code generating system. Additionally, a method for configuring base station parameters comprises steps of: after a code generating system generates an operation code, the operation code is sent to a base station via a mobile station, wherein the operation code includes information required for performing a configuration operation; the base station, if determining the operation code as received to be valid, then performs the corresponding configuration operation according to the information required for performing the configuration operation. According to the present invention, without depending on the base station controller and other network elements such as a network management system, the base station can implement message interaction over air link, i.e., parameter configuration may be implemented without requiring the base station to access to the network management system; by using a key and a check code, a parameter configuration process which is triggered inadvertently or maliciously is avoided.