Our invention allows for control of particle formation at the nanoscale, providing a means to control nanoparticle and nanostructure formation using feedback on the fly from nanoparticle characteristic analysis and optimization/knowledge extraction control algorithms. A closed loop feedback controller causes the interaction of a shaped flaser pulse with a substrate. The substrate can be one or more solid, liquid or gas or any combination thereof. Nanoparticles are produced and their characteristics are measured. The measured characteristics are compared with the desired nanoparticle characteristics. If the measured and desired characteristics are not equivalent, the closed loop feedback controller modifies the shape of the laser pulse and the next cycle begins. With successive loop of the control process the difference between the desired and measured characteristics converges until they are equivalent. At the end of the process a relationship is developed between the desired nanoparticle characteristics and the laser pulse shape. A catalog of all pulse shapes generated and the resulting nanoparticle characteristics is generated each time the processor is cycled whether or not the nanoparticle characteristics are those desired.