A system and method for scan partitioning for testing an embedded logic circuit in an integrated circuit (IC) device is provided. One or more scan partitions in the embedded logic circuit are identified. Each scan partition includes one or more scan chains of scan registers. One or more interacting registers connecting scan registers of a first scan partition and scan registers of a second scan partition are identified and combined to form an interacting scan chain. The embedded logic circuit is tested by selectively activating the scan chains of the first and second scan partitions and the interacting scan chain.