In a system and method for controlling a distributed power rail vehicle consist, each of at least one powered rail vehicle in the rail vehicle consist is designated for operation as a remote trail. Based on the designation, a respective brake pipe valve of each of the at least one powered rail vehicle is automatically operated to a cut-out mode. Upon initiation of a service, an emergency, and/or a penalty brake application in the rail vehicle consist, the respective brake pipe valve of each of the at least one the powered rail vehicle is automatically operated to a cut-in mode. Upon completion of the service, emergency, and/or penalty brake application in the rail vehicle consist, the respective brake pipe valve of each of the at least one powered rail vehicle is automatically operated back to the cut-out mode.