Computer systems and methods are provided in which an agent executive, when initially executed in a virtual machine, obtains an agent API key from a user. This key is communicated to a grid computer system. An agent identity token, generated by a cryptographic token generation protocol when the key is valid, is received from the grid and stored in a secure data store associated with the agent executive. Information that evaluates the integrity of the agent executive is collected using agent self-verification factors. The information, encrypted and signed with a cryptographic signature, is communicated to the grid. Commands are sent from the grid to the agent executive to check the security, compliance, and integrity of the virtual machine processes and data structures. Based on these check results, additional commands are sent by the grid to the agent executive to correct security, compliance or integrity problems and/or to prevent security compromises.