An approach is provided to partition inter-linked documents into partitions of a database system. In some embodiments, a plurality of documents may be assigned to two or more partitions in the database system, thereby forming a number of inter-partition links between a first partition and a second partition. Here both the first partition and the second partition are in the two or more partitions. First documents may be assigned to the first partition while second documents are assigned to the second partition. Both the first documents and the second documents are in the plurality of documents. It is then determined whether moving one or more of the first documents in the first partition to the second partition reduces the number of inter-partition links between the first partition and the second partition. If that is the case, the one or more of the first documents are moved to the second partition.