A method of registering a print between print stages in a printing system is provided. The method comprises: printing a first part of a digital image on a substrate with a first print engine, wherein the first part of the digital image includes a plurality of reference features; scanning image content on the substrate as it is readied for the second print engine; determining the actual positions of the reference features; using the actual positions of the reference features to determine desired adjustments for the second part of the digital image; applying electronic registration according to the desired adjustments to modify image content of the second print to be aligned with content already on the substrate; and printing a second part of the digital image on the substrate.