Methods and systems are disclosed for generating, managing, and publishing documents based on document level objects and software level objects. In one aspect, a method is provided for managing documents in a computing system environment. The method includes identifying a placeholder object included in a document having a document level object, the placeholder object having metadata corresponding to a software level object. Software level object content is identified in response to a query message and is included within a response to the query message. A format of the software level object content included in the response is transformed into a second format based on a second set of constraints, and merged in the document based on the placeholder object. An output document may be generated such that the transformed software level object content replaces the placeholder object in the output document.