A system and method for putting a fuel cell system in a stand-by during a system idle condition to improve system fuel efficiency. The method can include diverting the cathode airflow around the stack, reducing an airflow output from a cathode compressor to a minimum allowable set-point, opening the stack contactors to disconnect the stack from the high voltage bus and electrically isolate the stack from the rest of the system, engaging an independent load to the stack, such as end cell heaters in the stack, to suppress stack voltage, maintaining a positive pressure in the anode side of the fuel cell stack and periodically bleeding the anode into the exhaust stream. When a system power request is made removing the idle condition, the system returns to normal operation by directing the airflow back to the cathode and opening the stack contactors when an open circuit voltage is attained.