Trunking with port aggregation for fabric ports in a Fiber Channel (FC) fabric and attached devices is described. In some examples, a method of establishing a connection between a node and the FC fabric includes: negotiating a first link between a first trunking node port in the node with a first trunking fabric port in the FC fabric; creating a trunking port channel with the first link as a first member, the trunking port channel supporting a plurality of virtual fabrics; logging in a logical interface for each of the plurality of virtual fabrics to the FC fabric over the trunking port channel; negotiating a second link between a second trunking node port in the node and a second trunking fabric port in the FC fabric; and adding the second link to the trunking port channel as a second member aggregated with the first member.