An image processing system includes an information processing apparatus and an image processing apparatus. The image processing apparatus generates a plurality of pieces of image data by scanning a plurality of documents, associates, with image data generated by scanning a handwritten document out of the plurality of pieces of image data, information indicating that the image data is image data generated by scanning a handwritten document, and transmits, to the information processing apparatus, the plurality of pieces of image data and the information. The information processing apparatus receives the information and the plurality of pieces of image data; and executes character recognition processing on first image data with which the information is not associated, and obtains character information based on the first image data, wherein character information based on second image data with which the information is associated is obtained by executing processing different from the character recognition processing.