Various embodiments include methods and systems performed by a processor of a first function block for providing secure timer synchronization with a second function block. Various embodiments may include storing, in a shared register space, a first time counter value in which the first time counter value is based on a global counter of the second function block, transmitting, from the shared register space, the stored first time counter value to a preload register of the first function block, receiving, by the first function block, a strobe signal from the second function block configured to enable the first time counter value in the preload register to be loaded into a global counter of the first function block, and configuring the global counter with the first time counter value from the preload register.