A control device (1) for machines (10) for magnetic cerebral or peripheral stimulation with cerebral and bodily navigation, which includes a plurality of keys (2) which can be associated with various functions of the machine (10) and configured for activating, when pressed, a respective function of the machine (10) associated with the respective key (2). The control device (1) also includes a touch screen (3) configured for displaying anatomical information of the subject or patient for a direct viewing from the operator with information relative to the function of the machine (10) which can be activated by the keys (2) and activating at least one further function of the machine (10) associated with a respective icon (7) which can be pressed with the touch screen (3), such as, for example, a stimulation.