Disclosed is an intelligent frequency-shift anti-interference autonomous communication method based on electromagnetic environment learning, applied to an intelligent frequency-shift anti-interference autonomous communication system based on electromagnetic environment learning. The method comprises a communication link establishing process and an intelligent frequency-shift anti-interference process in the communication process. In the communication link establishing process, a communication initiator initiates communication to a communication responder, and the communication initiator and the communication responder perform frequency point matching, and finally negotiate to establish a communication connection. In the intelligent frequency-shift anti-interference process, interference detection is carried out after the communication initiator and the communication responder establish a link, and a receiving frequency point is sensed, and finally, whether the receiving frequency point and a transmitting frequency point are matched or not is negotiated, so that implementation of intelligent frequency-shift anti-interference is realized.