Invention Grant
- Patent Title: Adaptive nanopore signal compression
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Application No.: US15844244Application Date: 2017-12-15
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Publication No.: US11139047B2Publication Date: 2021-10-05
- Inventor: Santiago Fernandez-Gomez
- Applicant: Roche Sequencing Solutions, Inc.
- Applicant Address: US CA Pleasanton
- Assignee: Roche Sequencing Solutions, Inc.
- Current Assignee: Roche Sequencing Solutions, Inc.
- Current Assignee Address: US CA Pleasanton
- Agency: Kilpatrick Townsend and Stockton LLP
- Main IPC: G01N33/48
- IPC: G01N33/48 ; G01N33/50 ; G16B30/00 ; C12Q1/6869 ; C12Q1/68 ; G01N33/487 ; H03M7/30

Abstract:
Techniques described herein relate to systems and methods for parallel DNA molecules sequencing. A preprocessor can receive raw data frames from a sensor chip including 100,000 or more cells, where each raw data frame can include detection signals from the 100,000 or more cells at a given time during the formation of the 100,000 or more cells or during the DNA molecules sequencing using the 100,000 or more cells. The preprocessor can then extract relevant information for determining states of the cells from the raw data frames, generate one or more digested frames that includes the extracted information, and send the digested frames to a processor for processing, such as base determination. Because the number of digested frames sent to the processor is less than a number of the raw data frames and the digested frames include preprocessed data, the amount of data being transferred to the processor and the amount of data processing by the processor can be reduced.
Public/Granted literature
- US20180173844A1 ADAPTIVE NANOPORE SIGNAL COMPRESSION Public/Granted day:2018-06-21
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