A secure roller controller of a roller conveyor system for logistics services includes a monitoring circuit, a controller module and a driving circuit and is electrically connected to a motor. The monitoring circuit is electrically connected to the controller module and the driving circuit to receive a power signal from the driving circuit. The controller module is electrically connected to the driving circuit to receive the power signal and instruct the driving circuit to drive the motor for speed adjustment according to the power signal. When instantly detecting that the power signal is irregular, the monitoring circuit transmits an irregularity signal to the controller module for the controller module to instantly decelerate a rotation speed of the motor to a safe rotation speed through the driving circuit. Accordingly, burn-down of the motor and the secure roller controller can be avoided to enhance operational stability and safety.