The disclosed computer-implemented method for synchronizing microservice data stores may include (i) establishing, at a first network node, an instance of a first microservice for an application and an instance of a distinct second microservice, (ii) establishing, at a distinct second network node, an additional instance of the first microservice and an additional instance of the distinct second microservice, (iii) establishing a single network channel for synchronizing, between the first network node and the distinct second network node, a first data store for the first microservice and a second data store for the distinct second microservice, and (iv) synchronizing the first data store for the first microservice and the second data store for the distinct second microservice. Various other methods, systems, and computer-readable media are also disclosed.