A method and system for discovering, defining, and implementing an application topology through the user of a graphical user interface is provided. A topology system may analyze the topology of an enterprise and provide a graphical representation of the application topology. The topology system may discover the application topology of an enterprise by accessing various configuration data stores of the enterprise. The topology system provides a graphical representation of the application topology and allows a user to modify the topology using a graphical user interface. The topology system may then control the implementation of the application topology.