A system and method for automated regulatory compliance checking for organizations is disclosed. The present subject matter discloses a method for generating queries to extract relevant data from an organization that with respect to the regulatory rules and subsequently performing automated compliance checking for the organization. In an embodiment, the system captures regulatory rules provided by a regulatory body for an organization and extracts logical specification of rules from the semantic model in DR-Prolog language. The system further extracts a conceptual data model from the semantic model and obtains mapping between the conceptual data model and plurality of physical database. The system generates queries and translated the queries on to physical database schema to extract relevant data from the organization. The extracted data is transformed into ground facts in DR-Prolog and compared with logical specification of rules to perform automated regulatory compliance checking.