To speed up output clock alignment in a digital phase locked loop wherein a controlled oscillator generates synthesizer pulses that are divided to produce output pulses at a predetermined normal spacing and time location, and wherein during an alignment procedure the output pulses are moved in time in response to a delay value obtained by comparing a phase of the output pulses with a phase applied to the controlled oscillator averaged over a number of synthesizer pulses in a feedback circuit to align said output pulses with a reference clock taking into account hardware delay, a group of the output pulses is advanced during the alignment procedure to reduce the spacing between them. After determining the delay value averaged over the group of output pulses subsequent output pulses are restored to their normal spacing and time locations.